Package: fishboot 1.0.3
Wencheng Lau-Medrano
fishboot: Bootstrap-Based Methods for the Study of Fish Stocks and Aquatic Populations
A suite of bootstrap-based models and tools for analyzing fish stocks and aquatic populations. Designed for ecologists and fisheries scientists, it supports data from length-frequency distributions, tag-and-recapture studies, and hard structure readings (e.g., otoliths). See Schwamborn et al., 2019 <doi.org/10.1016/j.ecolmodel.2018.12.001> for background. The package includes functions for bootstrapped fitting of growth curves and plotting.
Authors:
fishboot_1.0.3.tar.gz
fishboot_1.0.3.zip(r-4.7-any)fishboot_1.0.3.zip(r-4.6-any)fishboot_1.0.3.zip(r-4.5-any)
fishboot_1.0.3.tgz(r-4.6-any)fishboot_1.0.3.tgz(r-4.5-any)
fishboot_1.0.3.tar.gz(r-4.7-any)fishboot_1.0.3.tar.gz(r-4.6-any)
fishboot_1.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
fishboot/json (API)
| # Install 'fishboot' in R: |
| install.packages('fishboot', repos = c('https://rschwamborn.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rschwamborn/fishboot/issues
- alba_boot - Bootstrapped VBGF estimates for the alba data set
- bonito_boot - Bootstrapped growth estimates for the bonito data set
Last updated from:449590d461. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 161 | ||
| source / vignettes | OK | 204 | ||
| linux-release | OK | 162 | ||
| macos-release | OK | 177 | ||
| macos-oldrel | OK | 134 | ||
| windows-devel | OK | 106 | ||
| windows-release | OK | 117 | ||
| windows-oldrel | OK | 122 | ||
| wasm-release | OK | 129 |
Exports:ELEFAN_GA_bootELEFAN_SA_bootgrolenage_bootgrotag_bootlfqResampleLinfK_scatterhistunivariate_densityvbgfCI_time
Dependencies:bootbootstrapclicodetoolscrayondata.tabledoParallelexpmfishmethodsFNNforeachGAgenericsGenSAglueiteratorskernlabKernSmoothkslatticelifecyclelme4magrittrMASSMatrixmclustmgcvminqamsmmulticoolmvtnormnlmenloptrnumDerivpillarpkgconfigplyrpracmarbibutilsRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangstringistringrsurvivaltibbleTMBTropFishRutf8vctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bootstrapped VBGF estimates for the alba data set | alba_boot |
| Bootstrapped growth estimates for the bonito data set | bonito_boot |
| Bootstraped ELEFAN_GA | ELEFAN_GA_boot |
| Bootstraped ELEFAN_SA | ELEFAN_SA_boot |
| Bootstrapped length-at-age analysis | grolenage_boot |
| Bootstrapped tag-and-recapture growth analysis | grotag_boot |
| Resampling of length-frequency data | lfqResample |
| Linf/K scatterplot of bootstrapping results | LinfK_scatterhist |
| Univariate kernel density estimate plot of VBGF parameter from bootstrapping results | univariate_density |
| VBGF plot and CI | vbgfCI_time |